[phylocom-user] icomdist in R
steve.kembel at gmail.com
Mon Aug 10 09:29:15 PDT 2009
the icomdist function is unfortunately not available in picante yet
and I'm not sure how you could obtain similar output.
The only thing I can suggest at this point is to try exporting your
data from R to phylocom format (i.e. using the write.tree and
writesample functions) and run the analysis in phylocom.
On Jul 26, 2009, at 12:19 PM, Nicola van Wilgen wrote:
> Dear phylocom list users
> I would like to know whether the function "icomdist" which is
> in phylocom is also available under the package 'picante' in R? I
> seem to find it. There is a function 'comdist', but this gives a
> different output from the one I am interested in.
> I would appreciate it if anyone could give me some advice on this.
> Perhaps there are a number of other functions which together can
> give a
> simialr output to icomdist.
> Many thanks!
> Outputs the mean pairwise distance matrix between each taxon and all
> members of other samples. In the output, AV refers to mean distance,
> refers to mean nearest neighbor distance."
> phylocom-user mailing list
> phylocom-user at lists.phylodiversity.net
More information about the phylocom-user