[phylocom-user] nodesig bus error

Cam Webb cwebb at oeb.harvard.edu
Sun Jan 18 01:32:42 PST 2009


Hi Mike,

Could you post some snippets of the the files that won't work?  Thx.

Best,

Cam

On Thu, 15 Jan 2009, Mike Cox wrote:

> Hi All,
>
> I'm having trouble with nodesig, running:
>
> ./phylocom nodesig
>
> with phylo and sample files initially gave the result:
>
> File `sample' has mac newlines
> Error: sample abundances must be integers
>
> The sample abundances are presence/absence 1/0 so definitely integers.  Using 
> TextWrangler I resaved the sample file as UNIX in case that was the problem 
> and now end up with
>
> File `sample' has unix newlines
> Bus error
>
> I've run the example files and they work, I've eliminated weird characters 
> from the species names and am at a loss as to the problem.
>
> If anyone can help that'd be great
>
> cheers
>
> Mike
>
>
> Mike Cox
>
> Visiting Postdoctoral Fellow
> Department of Anesthesia and Perioperative Care,
> University of California San Francisco,
> 513 Parnassus Ave., S261,
> San Francisco,
> CA 94143.
>
> Tel: 415 476 1822
> Fax: 415 476 8841
>
>
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