[phylocom-user] lttr bug report
cwebb at oeb.harvard.edu
Thu Apr 1 20:12:58 PDT 2010
Thanks for that bug report. You are correct about the re-initialization.
Fixed source code at:
You can build with `make' as per the manual. We'll include the fix in
subsequent release versions. Let us know if you need a compiled version.
On Thu, 1 Apr 2010, Adam Richman wrote:
> The functions ltt and lttr in phylocom both return the percent lineages
> through time, but do not return the same answers for the same data set.
> The problem is with lttr. The first sample is handled correctly (agrees with
> ltt), but all successive samples are handled incorrectly.
> A work around then is to list each different sample first in the sample file.
> The results for the first sample will be correct.
> Successive runs of lttr give different results (% lineages through time) for
> the same data set (for other than the first sample). Because the code works
> correctly for the first sample, but not for the others, I suppose the problem
> must lie with re-initialization.
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