[phylocom-user] *** buffer overflow detected ***: ./phylocom terminated

Simon Queenborough queenborough.1 at osu.edu
Fri Apr 27 12:24:19 PDT 2012


Hi,

I am using ubuntu 11.04, and just installed phylocom, which worked ok. 
However, when I try and run any command in phylocom, it aborts as 
follows below.

I am not au fait enough with linux to know what is going on, and any 
help would be much appreciated!

Thanks, Simon

simon at simon-desktop-office:~/phylocom/phylocom-4.2/src$ ./phylocom bladj 
output.tree.new
*** buffer overflow detected ***: ./phylocom terminated
======= Backtrace: =========
/lib/i386-linux-gnu/libc.so.6(__fortify_fail+0x45)[0xb7692c75]
/lib/i386-linux-gnu/libc.so.6(+0xe7a77)[0xb7691a77]
/lib/i386-linux-gnu/libc.so.6(+0xe6edf)[0xb7690edf]
./phylocom[0x804d73f]
./phylocom[0x804bba6]
./phylocom[0x8049444]
/lib/i386-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0xb75c3113]
./phylocom[0x8048b71]
======= Memory map: ========
08048000-08070000 r-xp 00000000 08:01 2097828    
/home/simon/phylocom/phylocom-4.2/src/phylocom
08070000-08071000 r--p 00027000 08:01 2097828    
/home/simon/phylocom/phylocom-4.2/src/phylocom
08071000-08072000 rw-p 00028000 08:01 2097828    
/home/simon/phylocom/phylocom-4.2/src/phylocom
08072000-0807e000 rw-p 00000000 00:00 0
08eda000-08efb000 rw-p 00000000 00:00 0          [heap]
b758a000-b75a6000 r-xp 00000000 08:01 28967866   
/lib/i386-linux-gnu/libgcc_s.so.1
b75a6000-b75a7000 r--p 0001b000 08:01 28967866   
/lib/i386-linux-gnu/libgcc_s.so.1
b75a7000-b75a8000 rw-p 0001c000 08:01 28967866   
/lib/i386-linux-gnu/libgcc_s.so.1
b75a8000-b75aa000 rw-p 00000000 00:00 0
b75aa000-b7722000 r-xp 00000000 08:01 28971568   
/lib/i386-linux-gnu/libc-2.13.so
b7722000-b7724000 r--p 00178000 08:01 28971568   
/lib/i386-linux-gnu/libc-2.13.so
b7724000-b7725000 rw-p 0017a000 08:01 28971568   
/lib/i386-linux-gnu/libc-2.13.so
b7725000-b7728000 rw-p 00000000 00:00 0
b7728000-b7750000 r-xp 00000000 08:01 28971572   
/lib/i386-linux-gnu/libm-2.13.so
b7750000-b7751000 r--p 00028000 08:01 28971572   
/lib/i386-linux-gnu/libm-2.13.so
b7751000-b7752000 rw-p 00029000 08:01 28971572   
/lib/i386-linux-gnu/libm-2.13.so
b7763000-b7765000 rw-p 00000000 00:00 0
b7765000-b7766000 r-xp 00000000 00:00 0          [vdso]
b7766000-b7784000 r-xp 00000000 08:01 28967972   
/lib/i386-linux-gnu/ld-2.13.so
b7784000-b7785000 r--p 0001d000 08:01 28967972   
/lib/i386-linux-gnu/ld-2.13.so
b7785000-b7786000 rw-p 0001e000 08:01 28967972   
/lib/i386-linux-gnu/ld-2.13.so
bf85c000-bf87d000 rw-p 00000000 00:00 0          [stack]
Aborted




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